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Data
Data
 
 
combine_methods
combine_methods
 
 
pdb_process
pdb_process
 
 
repDNA
repDNA
 
 
.DS_Store
.DS_Store
 
 
Dict_methods.py
Dict_methods.py
 
 
Methods_all_16_methods.py
Methods_all_16_methods.py
 
 
MoleculerMeths.py
MoleculerMeths.py
 
 
_01_ORF_code.py
_01_ORF_code.py
 
 
_02_CTDcode.py
_02_CTDcode.py
 
 
_03_Fickettcode.py
_03_Fickettcode.py
 
 
_04_kmer_counts.py
_04_kmer_counts.py
 
 
_05_Hexamercode.py
_05_Hexamercode.py
 
 
_06_proparcoder.py
_06_proparcoder.py
 
 
_07_GCcounts.py
_07_GCcounts.py
 
 
_08_edpfeature.py
_08_edpfeature.py
 
 
_09_StopCodon.py
_09_StopCodon.py
 
 
_10_onehot.py
_10_onehot.py
 
 
_15_SparseEncoding.py
_15_SparseEncoding.py
 
 
_18_SStructure.py
_18_SStructure.py
 
 
_19_CTDcoder_st_ph.py
_19_CTDcoder_st_ph.py
 
 
_20_trans_pdb.py
_20_trans_pdb.py
 
 
_p01_CTD2.py
_p01_CTD2.py
 
 
_p02_AAC.py
_p02_AAC.py
 
 
_p03_onehot.py
_p03_onehot.py
 
 
_p04_PSSSA.py
_p04_PSSSA.py
 
 
_p051_mk_PSSM.py
_p051_mk_PSSM.py
 
 
_p052_simplePSSM.py
_p052_simplePSSM.py
 
 
pca.py
pca.py
 
 
proteinMeth.py
proteinMeth.py
 
 
readme.txt
readme.txt
 
 
rna_rna_oned.h5
rna_rna_oned.h5
 
 
rna_rna_oned.py
rna_rna_oned.py
 
 
rnaqua.log
rnaqua.log
 
 
staticsMethods.py
staticsMethods.py
 
 
utils1.py
utils1.py
 
 
utils2.py
utils2.py
 
 
utils3.py
utils3.py
 
 
utils4.py
utils4.py
 
 
utils5.py
utils5.py
 
 

readme.txt

There are two more required files "ncbi-blast-2.9.0+-x64-linux.tar.gz" and "swissprot.zip"

> The software package “ncbi-blast-2.9.0+” could be downloaded from https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.9.0/ncbi-blast-2.9.0+-x64-linux.tar.gz. (Approximate file size: 712M) Unzip and place it into this folder.

>The database generated by Swissprot could be downloaded from http://idrblab.org/corain/download/swissprot.zip. (Approximate file size: 167M) Unzip and place it into this folder.