Posts
Teaching
Software
Publications
About

Category: Paper

January 2026 QuadRank: Engineering a High Throughput Rank
paper hpc data-structure
August 2025 QuickHeap: the fastest priority queue
paper hpc data-structure software
February 2025 PtrHash: Minimal Perfect Hashing at RAM Throughput
paper mphf data-structure software
July 2024 SimdMinimizers: Computing random minimizers, fast
paper walkthrough hpc minimizers nthash software
June 2024 A near-tight lower bound on minimizer density
paper minimizers math
March 2024 A*PA2: Up to 19x faster exact global alignment
paper pairwise-alignment astar hpc software

GitHub · Twitter · Bluesky · Google Scholar · bioRxiv · arXiv · ORCID · RSS

This blog is open source and licensed under CC BY-SA 4.0.

© 2021 - 2026 Ragnar {Groot Koerkamp} · Powered by Hugo & Coder.