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How to RUN pipeline with MinION fastq file

Status: Open.

#18 In DaehwanKimLab/hisat;

· sekhwal opened on May 9, 2020

Is there any way to get HISAT2 to put XS tags on non-canonical splice junctions?

Status: Open.

#17 In DaehwanKimLab/hisat;

· qoiopipq opened on Jul 12, 2017

Hisat keeps running indefinetly on some FastQ files, they do work in Hisat2

Status: Open.

#16 In DaehwanKimLab/hisat;

· npklein opened on Jun 18, 2016

split reads not considered in --local mode

Status: Open.

#15 In DaehwanKimLab/hisat;

· vivekbhr opened on Oct 29, 2015

upload Drosophila melanogaster index to the website

Status: Open.

#4 In DaehwanKimLab/hisat;

· antonkulaga opened on Apr 3, 2015

segmentation fault on flybase data

Status: Open.

#3 In DaehwanKimLab/hisat;

· antonkulaga opened on Apr 3, 2015