nowayout is an ultra-fast automated software pipeline for taxonomic classification of Eukaryotic mitochondrial reads.

cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and isolate clustering based on NCBI Pathogen Detection Project for Cronobacter.

Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.

strainfish is a weighted ensemble machine learning algorithm with multiple DNA sequence encoders and logic, specifically designed for classification of marker sequences.

centriflaken

cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and traceback based on NCBI Pathogen Detection Project for Cronobacter.

Aggregate results from bioinformatics analyses across many samples into a single report.

Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.

A DSL for data-driven computational pipelines

An attempt to help anyone interested in using Perl for Bioinformatics

A complete pipeline for metagenomic analysis

A complete pipeline for metagenomic analysis

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Trinity RNA-Seq de novo transcriptome assembly

SBEToolbox (Systems Biology and Evolution Toolbox) is developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network.