A VIBE-CODED Sublime Text extension for interaction with Claude-Code

Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads

DADA2, reimplemented in Rust

agentic AI coding assistant integrating claude code and codex cli

Nextflow pipeline for generating reference databases for amplicon sequences.

A multiscale pangenome browser

OpenGL Powered Pretext Contact Map Viewer

A (very) simple script to QC Hi-C data.

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

Whole Genome Alignment Tools

FastK based version of Merqury

A Nextflow pipeline for the assembly and binning of metagenomes from PacBio HiFi and Illumina Hi-C sequencing data.

Fast, flexible and extensible genome browser.

Documentation that simply works

strange cross-platform, performance-oriented and interactive pangenome and large graph visualization

Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.

🐙 A curated database of completed assemblies with taxonomy IDs

A robust and fast clustering method for amplicon-based studies

R package MiscMetabar: Miscellaneous functions for metabarcoding analysis

Nextflow workflow syntax highlighting and snippets for Sublime Text 4

Action to delete containers from Github container registry

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

A more efficient quality control tool for sequencing data

A tool for evaluating long-read de novo assembly results

Reorients assembled microbial sequences

TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming

Python Redmine is a library for communicating with a Redmine project management application

A genome browser designed for complex structural variants and long reads.

GFA visualizer, GPU-accelerated using Vulkan