This folder contains the code required to run an instance of the software suite Regulatory Sequence Analysis Tools (RSAT).
Releases are used to mark development progress and might trigger updates Docker containers and conda recipes. Release names have the format 2025.04.04 so that they work also in conda.
Contact: Jacques.van-Helden[AT]univ-amu.fr , rsat-contact[AT]list01.bio.ens.psl.eu
Authors: Jacques van Helden + the RSAT team.
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contrib software tools developed by collaborators, in C, requiring compilation.
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doc documentation in various formats.
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perl-scripts Perl scripts, which constitute most of the RSAT and NeAT code.
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public_html Web interface (cgi + php scripts).
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python-scripts Python scripts
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ws_clients examples of Web services clients in different languages.
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app_sources download the code source of diverse applications (dependencies plus optional complementary software tools).
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bin executable binaries (including the compiled C programs).
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downloads this folder is created at RSAT initialisation. It serves to download the genome data from NCBI, Ensembl or other databases, which will serve to install organisms on RSAT.
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- on Unix systems
- with conda
- as container with motif collections: Docker, Apptainer
Spanish Ministry of Economy and Competitiveness grants [AGL2014-52063R, AGL2016-80967-R, AGL2017-83358-R] (MCIU/AEI/FEDER/UE). Government of Aragón grants [A44, A09_17R, A09_23R, A10_23R] which were co-financed with FEDER funds. Consejo Superior de Investigaciones Científicas grants [2020AEP119, FAS2022_052, INFRA24018]. Programa Euroinvestigación/Plant KBBE 2008 [EUI2008-03612]. PRIMA project [PCI2019-103526].