LessUp / micos-2024 Star 10 Code Issues Pull requests MICOS-2024: 端到端宏基因组综合分析平台 | End-to-end Metagenomic Intelligence and Comprehensive Omics Suite python docker workflow bioinformatics genomics computational-biology metagenomics wdl data-analysis microbiome qiime2 kraken2 humann3 metagenomics-pipeline nextgen-sequencing nextflow-alternative Updated Apr 28, 2026 R
PopovIILab / BatShotMetaFlow Star 1 Code Issues Pull requests 🦇🧫📊Study on bat gut shotgun metagenomics phylogenetics beta-diversity microbial-communities blast spades differential-abundance-analyses fastq-files refseq alpha-diversity prokka quast kraken2 abricate lab-journal maaslin2 shotgun-metagenomics fastani humann3 virsorter2 Updated Jan 7, 2026 Jupyter Notebook
kavyamguru / MSc_Dissertation_Kvass Star 0 Code Issues Pull requests Integrated 16S + shotgun metagenomics workflow for kvass fermentation (QIIME2, MetaPhlAn4, Kraken2, HUMAnN3, DRAM2) with reproducible outputs. shell bash bioinformatics r nextflow shotgun hpc metagenomics dram kraken fermentation microbiome-analysis kaiju qiime2 bracken msc-dissertation humann3 metaphlan4 microbiome-metabolism kvass Updated Feb 28, 2026 Shell