marrink-lab / polyply_1.0 Star 189 Code Issues Pull requests Discussions Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates dna hacktoberfest atomistic-simulations md martini carbohydrates coarse-graining polymers macromolecules Updated May 8, 2026 Python
febos / ContExt Star 0 Code Issues Pull requests Contact Extractor from PDB/mmCIF coordinate files atom parser geometry pdb contacts distance extractor structure atoms contact mmcif 3d 3d-structure 3d-coordinate bioinformatics-tool atom-atom macromolecules contact-extractor atom-atom-pairs clapnac Updated May 9, 2025 Python