Structural variation caller using third generation sequencing
-
Updated
Apr 2, 2026 - Python
#
nanopore
Here are 119 public repositories matching this topic...
A PyTorch Basecaller for Oxford Nanopore Reads
-
Updated
Feb 20, 2026 - Python
Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
deep-learning nanopore genomics computational-biology pacbio variant-calling illumina long-reads variant-detection ont-data ont-models
-
Updated
Apr 27, 2026 - Python
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
-
Updated
Oct 18, 2024 - Python
PEPPER-Margin-DeepVariant
nanopore variants variant-calling oxford-nanopore genome-variation long-reads pacbio-ccs assembly-polishing
-
Updated
Jan 12, 2024 - Python
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
-
Updated
Apr 28, 2026 - Python
Methylation/modified base calling separated from basecalling.
-
Updated
Sep 17, 2024 - Python
Identification of differential RNA modifications from nanopore direct RNA sequencing
python machine-learning rna-seq nanopore genomics rna transcriptomics modification nanopore-sequencing rna-modifications
-
Updated
Nov 7, 2024 - Python
SquiggleKit: A toolkit for manipulating nanopore signal data
-
Updated
Feb 16, 2024 - Python
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
-
Updated
Apr 17, 2026 - Python
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
-
Updated
Mar 2, 2026 - Python
Research release basecalling models and configurations
-
Updated
May 21, 2025 - Python
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
-
Updated
Oct 25, 2021 - Python
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
-
Updated
Feb 7, 2023 - Python
ClairS - a deep-learning method for long-read somatic small variant calling
bioinformatics deep-learning nanopore genomics somatic-variants haplotypes pacbio somatic-mutations illumina indels phasing snvs long-reads ont long-read-sequencing short-reads
-
Updated
Apr 16, 2026 - Python
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
nanopore ngs metagenomics comparative-genomics kraken contamination clark robustness centrifuge low-biomass lmat
-
Updated
Feb 10, 2026 - Python
Graph-based assembly phasing
-
Updated
Nov 25, 2025 - Python
Snakemake pipelines for nanopore sequencing data archiving and processing
-
Updated
Feb 2, 2022 - Python
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
bioinformatics deep-learning nanopore genomics somatic-variants variants pacbio variant-calling somatic-mutations illumina snvs long-reads ont long-read-sequencing tumors tumor-only
-
Updated
Apr 28, 2026 - Python
Improve this page
Add a description, image, and links to the nanopore topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the nanopore topic, visit your repo's landing page and select "manage topics."