Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).
Ploidy agnostic phasing pipeline and algorithm
Method for rescuing collapsed contigs.
Automated processing and haplotype inference for double-barcoded PCR amplicons
🌺 Short pipeline for counting number of clusters across .sam files
Add a description, image, and links to the polyploid topic page so that developers can more easily learn about it.
To associate your repository with the polyploid topic, visit your repo's landing page and select "manage topics."