NOREVA doesn't produce any outputs

[gauravmoghe]

Hi,

I'm using Mac Catalina but I tried this also on Windows and NOREVA does not work in both cases. I downloaded NOREVA and installed all its dependencies in RStudio, with latest versions of R/RStudio. The installation of all dependencies and NOREVA went well. I can load the library without any errors.

I downloaded the 'Multiclass_without_QCSIS.csv' demo file Multiclass_without_QCSIS.csv
from the website and ran the commands as outlined in this tutorial. The PrepareInuputFiles command runs fine but the others don't produce any outputs even after several minutes of waiting. Specifically, I ran the following commands:

library(NOREVA)

peaks <- PrepareInuputFiles(dataformat=1, 
                            rawdata='Multiclass_without_QCSIS.csv')

normulticlassnoall(fileName=peaks, SAalpha="Y", SAbeta="Y", SAgamma="Y") #I also tried running the next command directly without running this command

outmatrix <- normulticlassmatrix(datatype=1, fileName=peaks, impt=2, trsf=2, nmal=20)

write.csv(outmatrix, file='processed-optimal.csv')

I also tried this with my real MS data, which is several thousand peaks. It does not run with that too. There are no error messages but also no R objects or standard output streams produced.

This issue is the same as a previously closed issue: #2